Quantifying the use of bioresources for promoting their sharing in scientific research
Identifieur interne : 004525 ( Main/Exploration ); précédent : 004524; suivant : 004526Quantifying the use of bioresources for promoting their sharing in scientific research
Auteurs : Laurence Mabile [France] ; Raymond Dalgleish [Royaume-Uni] ; Gudmundur A. Thorisson [Royaume-Uni, Islande] ; Mylène Deschênes [Canada] ; Robert Hewitt [France] ; Jane Carpenter [Australie] ; Elena Bravo [Italie] ; Mirella Filocamo [Italie] ; Pierre Antoine Gourraud [États-Unis] ; Jennifer R. Harris [Norvège] ; Paul Hofman [France] ; Francine Kauffmann [France] ; Maria Angeles Mu Oz-Fernàndez [Espagne] ; Markus Pasterk [France] ; Anne Cambon-Thomsen [France]Source :
- GigaScience [ 2047-217X ] ; 2013.
Abstract
An increasing portion of biomedical research relies on the use of biobanks and databases. Sharing of such resources is essential for optimizing knowledge production. A major obstacle for sharing bioresources is the lack of recognition for the efforts involved in establishing, maintaining and sharing them, due to, in particular, the absence of adequate tools. Increasing demands on biobanks and databases to improve access should be complemented with efforts of end-users to recognize and acknowledge these resources. An appropriate set of tools must be developed and implemented to measure this impact.
To address this issue we propose to measure the use in research of such bioresources as a value of their impact, leading to create an indicator: Bioresource Research Impact Factor (BRIF). Key elements to be assessed are: defining obstacles to sharing samples and data, choosing adequate identifier for bioresources, identifying and weighing parameters to be considered in the metrics, analyzing the role of journal guidelines and policies for resource citing and referencing, assessing policies for resource access and sharing and their influence on bioresource use. This work allows us to propose a framework and foundations for the operational development of BRIF that still requires input from stakeholders within the biomedical community.
Url:
DOI: 10.1186/2047-217X-2-7
PubMed: 23634721
PubMed Central: 3655103
Affiliations:
- Australie, Canada, Espagne, France, Islande, Italie, Norvège, Royaume-Uni, États-Unis
- Midi-Pyrénées, Nouvelle-Galles du Sud, Occitanie (région administrative)
- Sydney
- Université de Sydney
Links toward previous steps (curation, corpus...)
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- to stream Ncbi, to step Curation: 001244
- to stream Ncbi, to step Checkpoint: 001244
- to stream Main, to step Merge: 004616
- to stream Main, to step Curation: 004525
Le document en format XML
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<affiliation wicri:level="1"><nlm:aff id="I14">UMR1018 INSERM-Université Paris Sud, 16 avenue Paul Vaillant Couturier, Villejuif Cedex, 94807, France</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>UMR1018 INSERM-Université Paris Sud, 16 avenue Paul Vaillant Couturier, Villejuif Cedex, 94807</wicri:regionArea>
<wicri:noRegion>94807</wicri:noRegion>
<wicri:noRegion>94807</wicri:noRegion>
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</author>
<author><name sortKey="Mu Oz Fernandez, Maria Angeles" sort="Mu Oz Fernandez, Maria Angeles" uniqKey="Mu Oz Fernandez M" first="Maria Angeles" last="Mu Oz-Fernàndez">Maria Angeles Mu Oz-Fernàndez</name>
<affiliation wicri:level="1"><nlm:aff id="I15">HIV HGM Spanish Biobank, C/Dr. Esquerdo, Madrid, 46.28007, Spain</nlm:aff>
<country xml:lang="fr">Espagne</country>
<wicri:regionArea>HIV HGM Spanish Biobank, C/Dr. Esquerdo, Madrid, 46.28007</wicri:regionArea>
<wicri:noRegion>46.28007</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Pasterk, Markus" sort="Pasterk, Markus" uniqKey="Pasterk M" first="Markus" last="Pasterk">Markus Pasterk</name>
<affiliation wicri:level="1"><nlm:aff id="I16">International Prevention Research Institute, 95 Cours Lafayette, Lyon, 69006, France</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>International Prevention Research Institute, 95 Cours Lafayette, Lyon, 69006</wicri:regionArea>
<wicri:noRegion>69006</wicri:noRegion>
<wicri:noRegion>69006</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Cambon Thomsen, Anne" sort="Cambon Thomsen, Anne" uniqKey="Cambon Thomsen A" first="Anne" last="Cambon-Thomsen">Anne Cambon-Thomsen</name>
<affiliation wicri:level="1"><nlm:aff id="I1">Epidémiologie et analyses en santé publique, Faculté de médecine, UMR1027 INSERM-Université de Toulouse III, 37 allées Jules Guesde, Toulouse Cedex 7, F-31073, France</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>Epidémiologie et analyses en santé publique, Faculté de médecine, UMR1027 INSERM-Université de Toulouse III, 37 allées Jules Guesde, Toulouse Cedex 7, F-31073</wicri:regionArea>
<wicri:noRegion>31073</wicri:noRegion>
<wicri:noRegion>31073</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="I2">UMR1027 INSERM-Université de Toulouse III-Paul Sabatier, 118 Route de Narbonne, Toulouse Cedex 9, 31062, France</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>UMR1027 INSERM-Université de Toulouse III-Paul Sabatier, 118 Route de Narbonne, Toulouse Cedex 9, 31062</wicri:regionArea>
<wicri:noRegion>31062</wicri:noRegion>
<wicri:noRegion>31062</wicri:noRegion>
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</author>
</analytic>
<series><title level="j">GigaScience</title>
<idno type="eISSN">2047-217X</idno>
<imprint><date when="2013">2013</date>
</imprint>
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<front><div type="abstract" xml:lang="en"><p>An increasing portion of biomedical research relies on the use of biobanks and databases. Sharing of such resources is essential for optimizing knowledge production. A major obstacle for sharing bioresources is the lack of recognition for the efforts involved in establishing, maintaining and sharing them, due to, in particular, the absence of adequate tools. Increasing demands on biobanks and databases to improve access should be complemented with efforts of end-users to recognize and acknowledge these resources. An appropriate set of tools must be developed and implemented to measure this impact.</p>
<p>To address this issue we propose to measure the use in research of such bioresources as a value of their impact, leading to create an indicator: Bioresource Research Impact Factor (BRIF). Key elements to be assessed are: defining obstacles to sharing samples and data, choosing adequate identifier for bioresources, identifying and weighing parameters to be considered in the metrics, analyzing the role of journal guidelines and policies for resource citing and referencing, assessing policies for resource access and sharing and their influence on bioresource use. This work allows us to propose a framework and foundations for the operational development of BRIF that still requires input from stakeholders within the biomedical community.</p>
</div>
</front>
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<biblStruct><analytic><author><name sortKey="Alsheikh Ali, Aa" uniqKey="Alsheikh Ali A">AA Alsheikh-Ali</name>
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<biblStruct><analytic><author><name sortKey="Savage, Cj" uniqKey="Savage C">CJ Savage</name>
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</analytic>
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<biblStruct><analytic><author><name sortKey="Cambon Thomsen, A" uniqKey="Cambon Thomsen A">A Cambon-Thomsen</name>
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</author>
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<biblStruct><analytic><author><name sortKey="Garfield, E" uniqKey="Garfield E">E Garfield</name>
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<biblStruct><analytic><author><name sortKey="Paskin, N" uniqKey="Paskin N">N Paskin</name>
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<biblStruct><analytic><author><name sortKey="Kauffmann, F" uniqKey="Kauffmann F">F Kauffmann</name>
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<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Vadakkeparambil, S" uniqKey="Vadakkeparambil S">S Vadakkeparambil</name>
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<biblStruct><analytic><author><name sortKey="Thorisson, Ga" uniqKey="Thorisson G">GA Thorisson</name>
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<biblStruct><analytic><author><name sortKey="Fenner, M" uniqKey="Fenner M">M Fenner</name>
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<author><name sortKey="Zeps, N" uniqKey="Zeps N">N Zeps</name>
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<affiliations><list><country><li>Australie</li>
<li>Canada</li>
<li>Espagne</li>
<li>France</li>
<li>Islande</li>
<li>Italie</li>
<li>Norvège</li>
<li>Royaume-Uni</li>
<li>États-Unis</li>
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<region><li>Midi-Pyrénées</li>
<li>Nouvelle-Galles du Sud</li>
<li>Occitanie (région administrative)</li>
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</settlement>
<orgName><li>Université de Sydney</li>
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<tree><country name="France"><region name="Occitanie (région administrative)"><name sortKey="Mabile, Laurence" sort="Mabile, Laurence" uniqKey="Mabile L" first="Laurence" last="Mabile">Laurence Mabile</name>
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<name sortKey="Cambon Thomsen, Anne" sort="Cambon Thomsen, Anne" uniqKey="Cambon Thomsen A" first="Anne" last="Cambon-Thomsen">Anne Cambon-Thomsen</name>
<name sortKey="Cambon Thomsen, Anne" sort="Cambon Thomsen, Anne" uniqKey="Cambon Thomsen A" first="Anne" last="Cambon-Thomsen">Anne Cambon-Thomsen</name>
<name sortKey="Hewitt, Robert" sort="Hewitt, Robert" uniqKey="Hewitt R" first="Robert" last="Hewitt">Robert Hewitt</name>
<name sortKey="Hofman, Paul" sort="Hofman, Paul" uniqKey="Hofman P" first="Paul" last="Hofman">Paul Hofman</name>
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<name sortKey="Kauffmann, Francine" sort="Kauffmann, Francine" uniqKey="Kauffmann F" first="Francine" last="Kauffmann">Francine Kauffmann</name>
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<name sortKey="Pasterk, Markus" sort="Pasterk, Markus" uniqKey="Pasterk M" first="Markus" last="Pasterk">Markus Pasterk</name>
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<country name="Canada"><noRegion><name sortKey="Deschenes, Mylene" sort="Deschenes, Mylene" uniqKey="Deschenes M" first="Mylène" last="Deschênes">Mylène Deschênes</name>
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</country>
<country name="Australie"><region name="Nouvelle-Galles du Sud"><name sortKey="Carpenter, Jane" sort="Carpenter, Jane" uniqKey="Carpenter J" first="Jane" last="Carpenter">Jane Carpenter</name>
</region>
</country>
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<country name="États-Unis"><noRegion><name sortKey="Gourraud, Pierre Antoine" sort="Gourraud, Pierre Antoine" uniqKey="Gourraud P" first="Pierre Antoine" last="Gourraud">Pierre Antoine Gourraud</name>
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<country name="Espagne"><noRegion><name sortKey="Mu Oz Fernandez, Maria Angeles" sort="Mu Oz Fernandez, Maria Angeles" uniqKey="Mu Oz Fernandez M" first="Maria Angeles" last="Mu Oz-Fernàndez">Maria Angeles Mu Oz-Fernàndez</name>
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